EcOH: In silico serotyping of E. coli from short read data
نویسندگان
چکیده
1" 2" Danielle J. Ingle, Mary Valcanis, Alex Kuzevski, Marija Tauschek, Michael Inouye, 3" Tim Stinear, Myron M. Levine, Roy M. Robins-Browne and Kathryn E. Holt 4" 5" 1 Department of Microbiology and Immunology, Peter Doherty Institute for Infection and 6" Immunity, The University of Melbourne, Victoria, Australia 7" 2 Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and 8" Biotechnology Institute, The University of Melbourne, Victoria, Australia 9" 3 Centre for Systems Genomics, The University of Melbourne, Victoria, Australia 10" 4 Microbiological Diagnostic Unit Public Health Laboratory, Peter Doherty Institute for 11" Infection and Immunity, The University of Melbourne, Victoria, Australia 12" 5 School of BioSciences, The University of Melbourne, Victoria, Australia 13" 6 Center for Vaccine Development, University of Maryland School of Medicine, Baltimore, 14" MD, USA 15" 7 Murdoch Childrens Research Institute, Royal Children's Hospital, Victoria 16" " 17" *Corresponding,author:,[email protected],,[email protected],, 18" [email protected]" 19" 20" 21" Abstract 22" ! 23" The lipopolysaccharide (O) and flagellar (H) surface antigens of Escherichia coli are targets 24"
منابع مشابه
In silico serotyping of E. coli from short read data identifies limited novel O-loci but extensive diversity of O:H serotype combinations within and between pathogenic lineages
The lipopolysaccharide (O) and flagellar (H) surface antigens of Escherichia coli are targets for serotyping that have traditionally been used to identify pathogenic lineages. These surface antigens are important for the survival of E. coli within mammalian hosts. However, traditional serotyping has several limitations, and public health reference laboratories are increasingly moving towards wh...
متن کاملCorrigendum: In silico serotyping of E. coli from short read data identifies limited novel O-loci but extensive diversity of O:H serotype combinations within and between pathogenic lineages
[This corrects the article DOI: 10.1099/mgen.0.000064.].
متن کاملPresence of multi-drug resistant pathogenic Escherichia coli in Zarjob River located in The State of Guilan, Iran
In modern medical processes, new antimicrobial drugs are being widely used in order to rapid and essential eradication of resistant bacterial strains. Broad-spectrum beta-lactamases are enzymes originated from mutations in the common plasmid genes mediators for beta-lactamases such as TEM-1, TEM-2, and SHV-1 are transferred among bacterial species. The genes coding the production of ESBL are of...
متن کاملAntibiotic resistance pattern and serotyping of Escherichia coli producing siderophore in people with urinary tract infection
Urinary tract infection is one of the most common bacterial infections of human. The most common agent of urinary tract infection is Escherichia coli . This study aims to determine the prevalence of uropathogenic E. coli urinary infection in human with different antimicrobial resistance, and quantitive and qualitative study of siderophore production and their association with the ability to cau...
متن کاملRapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data.
Accurate and rapid typing of pathogens is essential for effective surveillance and outbreak detection. Conventional serotyping of Escherichia coli is a delicate, laborious, time-consuming, and expensive procedure. With whole-genome sequencing (WGS) becoming cheaper, it has vast potential in routine typing and surveillance. The aim of this study was to establish a valid and publicly available to...
متن کامل